PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463686.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 267aa    MW: 31406.5 Da    PI: 5.002
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463686.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.58.6e-141149341
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    i+++ +r+ tf kR++ ++ K +ELS+LCd+++++ii+ 
  XP_016463686.1 11 IQDYKKRKSTFQKRKACLINKISELSILCDIKACMIIYE 49
                    999**********************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-14159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.582152IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-19293IPR002100Transcription factor, MADS-box
CDDcd002663.68E-20284No hitNo description
PRINTSPR004043.2E-7323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGRSKINMEL IQDYKKRKST FQKRKACLIN KISELSILCD IKACMIIYEG NNCEEIWPND  60
PNEVQELINL YKNQPIEDRS KRENSLSSFL ENEKKKAEIK MAKLKKKIKT EKYPTWDSRF  120
NYLSEKELRN LAGVLEKKME NAKEKTEFLK SSRNINQDSN QEIWDYPELM DNFNQSNPQP  180
ISYMDNQFFQ EFTTEFDHVN SMGILDNGQL SIDDYQFGNS DYMKIEAEDW LVNNGIIGSS  240
SRMQPMELNQ YSFISSGSTQ MPYGYLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463686.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLK4D6Y41e-82K4D6Y4_SOLLC; Uncharacterized protein
TrEMBLM1CN253e-82M1CN25_SOLTU; Uncharacterized protein
STRINGSolyc11g020320.1.13e-82(Solanum lycopersicum)
STRINGPGSC0003DMT4000710011e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-16AGAMOUS-like 87